Project data management/OA-ICC

This page is under construction (2013-10-16)

Seawater carbonate chemistry with R (seacarb)
Import measured and seacarb calculated sewater carbonate chemistry in one dataset
 * PI of original data/measured data = author of paper or the person who provided the original data
 * PI of seacarb calculated values = OA-ICC Data Curator
 * Method for seacarb calculation = Calculated using seacarb after Nisumaa et al. (2010) (Method ID 6426)
 * Refer to the seacarb citation (Reference ID 60864), set relation to Further details


 * Add the date of seacarb calculation as dataset comment. Date must be provided in ISO-format (e.g. 2013-10-16)
 * Give the short explanation of seacarb calculation into the dataset comment: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).

Example: Edmunds, 2012 doi:10.1594/PANGAEA.820375

Examples of data archiving
1) Data not yet archived
 * Import all (georeferenced) data, combine measured seawater chemistry with seawater carbonate chemistry calculation (seacarb).
 * If more than one dataset are archived, create a Parent.
 * Add the (paper's) abstract to the parent/single dataset and set the Reference relation Supplement to.
 * Set the project OA-ICC (Project ID 4173) in the Supplement to dataset, childs do not have a project.

Example: Edmunds et al., 2012, doi:10.1594/PANGAEA.820312

2) Data previously published in another database with URI (e.g. BCO-DMO):
 * Import measured seawater chemistry combined with seawater carbonate chemistry calculation (seacarb).
 * Mirroring also all other (georeferenced) data.
 * If more than one dataset is archived, create a Parent.
 * Add the (paper's) abstract to the parent/single dataset and set the Reference relation Supplement to.
 * Set the project OA-ICC (Project ID 4173) in the Supplement to dataset, childs do not have a project.
 * Create a reference for the external database link (URI and title, nothing else), and link this reference to all datasets, relation Other version.

Example: Comeau et al., 2012, doi:10.1594/PANGAEA.821467.

3) Data previously published in another database with DOI (e.g. BODC):
 * Import measured seawater chemistry combined with seawater carbonate chemistry calculation (seacarb).
 * Other data, e.g. biological parameters can be archived as mean values.
 * Add the (paper's) abstract to the dataset and set the reference relation Supplement to; definition of supplement
 * Set the project OA-ICC (Project ID 4173)
 * Create a reference for the external published doi (e.g. Hennige et al., 2012 BODC), give full citation information, and link this reference as Original version in the Pangaea dataset.

Example: Hennige et al., 2013, doi:10.1594/PANGAEA.820339.

4) Data previously published in Panagea
 * Create a table with measured seawater chemistry and the carbonate chemistry calculation (seacarb). Import this table.
 * References of this dataset:
 * Article citation, relation Related to
 * Original Pangaea parent dataset or a single dataset which is a supplement to the article, relation Related to
 * Original measured seawater carbonate chemistry dataset, relation Original version
 * No abstract is added.
 * Set the project OA-ICC (Project ID 4173)

Example: Schalkhausser et al., 2013, doi:10.1594/PANGAEA.820432.


 * Update original measured seawater carbonate chemistry dataset: link to the new carbonate chemistry calculation version as Further detail and with the comment Carbonate chemistry recalculation by seacarb

see Schalkhausser et al., 2013, doi:10.1594/PANGAEA.789153.

Parameter

 * List of all parameters used in EPOCA datasets


 * List of all parameters used in EPOCA and OA-ICC datasets

Contact
Data management
 * Jean-Pierre Gattuso, Observatoire Océanologique, Laboratoire d'Océanographie, Villefranche-sur-mer, France, mailto:gattuso@obs-vlfr.fr
 * Yan Yang, Data Curator, State Key Lab of Marine Environmental Science (Xiamen University), China, mailto:yangyan@xmu.edu.cn

Links

 * Ocean Acidification International Coordination Centre (OA-ICC)