Intern:Term-related taxonomic parameters

- Under construction -
 * These parameters are of data type 5 (typically named "XXX, unique identification")
 * E.g. "Species, unique identification" (parameter ID 510679), see https://issues.pangaea.de/browse/PMW-2108 or "Taxon/taxa, unique identification" (parameter ID 511751), see https://doi.pangaea.de/10.1594/PANGAEA.958463


 * The "Species, unique identification", for example, allows to use WoRMS (marine) or ITIS ( terrestrial and marine) terms which we have in the database, and to configure the columns “Species, unique identification (URI)“ and “Species, unique identification (Semantic URI)“ into the data matrix in addition to the species names.
 * Please do not use the parameter “Uniform resource locator/link to reference” to insert links to the WoRMS or ITIS databases anymore.
 * When other parameters are needed for taxonomic terms (e.g. Order, Family, Genus) these should be created also as term-related parameters of data type ID 5 (ID term).
 * Avoid redundancies in the data table. Do not use the Species UID parameter and other species-specific parameters in the same data table.


 * Import:
 * If species names are used in the data matrix, it is necessary to define the terminology in the import routine :
 * Column header 510679//#1 will assign WoRMS terms to species names in the data matrix.
 * Column header 510679//#2 will assign ITIS terms to species names in the data matrix.
 * It is possible to enter term IDs or semantic URIs (URNs) instead of species names into the import matrix. To do this, use the parameter ID 510679 (“Species, unique identification”) and paste the WoRMS/ITIS specific URNs including the species IDs (Aphia IDs or TSNs) in each cell e.g. as follows:
 * WoRMS: urn:lsid:marinespecies.org:taxname:137111
 * ITIS: urn:lsid:itis.gov:itis_tsn:552460
 * Please do not mix terms from ITIS and WoRMs within the same column, because the WoRMS/EMODnet Biology colleagues asked us to avoid mixing URNs from both terminologies in the same column.
 * When using semantic URIs only in the import matrix, it is not necessary to define the terminology because semantic URIs are unique. For large datasets (thousands of rows) it is however advisable to define the terminology by adding //#1 or //#2 to the parameter columns because this saves time during import.
 * Please assign the method defining how the organism was sampled, e.g. "Light microscope (LM), Zeiss, Axioplan 2"
 * Missing terms:
 * If no taxonomic term is available in the external taxonomic terminologies (to check whether terms exist in WoRMS use, the "WoRMS taxon match"; https://www.marinespecies.org/aphia.php?p=match) or in our own term catalogue (you will receive an error message if the term is not in our term catalogue), the respective lines can be left blank. Instead, an additional species text parameter, e.g. "Species" (7053) or "Species Common Name" (48496), with the species/taxa names should be added: e.g. https://doi.pangaea.de/10.1594/PANGEA.958463
 * If applicable, the appropriate genus term-parameter can additionally be added, e.g.  https://doi.pangaea.de/10.1594/PANGAEA.951172
 * If a taxon is available in the external taxonomic terminologies, but not in our own term catalogue, the respective term is not yet imported to our system (will be updated with a delay in the order of weeks). In this case, missing terms with the status „PANGAEA accepted“ with a "preliminary" Aphia-ID/URN (identical to the one given by WoRMS/ITIS) can be created manually. As soon as the term becomes available through the updated dumps from WoRMS/ITIS, the preliminary terms will be replaced and kept up to date from now on (due to the URN/Aphia-ID)
 * Template for the import of new terms:


 * Configuration in 4D:
 * After import of a dataset it is advised to add the columns “Species, unique identification (URI)“ and “Species, unique identification (Semantic URI)“ to the data matrix. In the Config tab of a dataset, drag and drop parameter “Species, unique identification” from the “Data series” to the “Configuration” field at the bottom to add columns. In the “Configuration” field right click on one of the “Species, unique identification” data series and choose either “$ (URI)” or “$ (semantic URI)”. Save the dataset.


 * Proofreading and editing:
 * As species names (and other taxonomic terms) are not unique, it is necessary to check whether the correct terms were assigned during import by clicking on the links in the column “Species, unique identification (URI)“ of the dataset on www.pangaea.de (should be done by the dataset author as well!).
 * If necessary, open the data series “Species, unique identification” of the dataset in 4D and select the correct term for the respective data point using the button “Choices”.
 * Helpful links
 * Intern:Import
 * Intern:Terminology Editor